Index

_

_absRecordFile (credo.systest.api.SysTestResult attribute)

A

actualTime (credo.systest.outputWithinRangeTest.OutputWithinRangeTest attribute) actualVal (credo.systest.outputWithinRangeTest.OutputWithinRangeTest attribute) add() (credo.analysis.fields.FieldComparisonList method) addNsPrefix() (in module credo.io.stgxml) addRun() (credo.modelsuite.ModelSuite method) addStdTest() (credo.systest.api.SysTestSuite method) addSubSuite() (credo.systest.api.SysTestSuite method) addSubSuites() (credo.systest.api.SysTestSuite method) addTestComponent() (credo.systest.scibenchmark.SciBenchmarkTest method) addVariant() (credo.modelsuite.ModelSuite method) allowedRange (credo.systest.outputWithinRangeTest.OutputWithinRangeTest attribute)

AnalysisOperation (class in credo.analysis.api) analysisOps (credo.modelrun.ModelRun attribute) analysisXML (credo.modelrun.ModelRun attribute) analysisXMLGen() (credo.modelrun.ModelRun method) AnalyticMultiResTest (class in credo.systest.analyticMultiRes) AnalyticTest (class in credo.systest.analytic) API applyToModel() (credo.modelsuite.StgXMLVariant method) applyToModelGenerator() (credo.modelsuite.StgXMLVariant method) attachOps() (credo.systest.api.TestComponent method) (credo.systest.fieldCvgWithScaleTest.FieldCvgWithScaleTest method) (credo.systest.fieldWithinTolTest.FieldWithinTolTest method) (credo.systest.imageCompTest.ImageCompTest method) (credo.systest.outputWithinRangeTest.OutputWithinRangeTest method)

B

basePath (credo.modelrun.ModelRun attribute) (credo.systest.api.SysTest attribute)

Benchmark

C

calcCvgFunc (credo.systest.fieldCvgWithScaleTest.FieldCvgWithScaleTest attribute) calcFieldCvgWithScale() (in module credo.analysis.fields) check() (credo.systest.api.TestComponent method) (credo.systest.fieldCvgWithScaleTest.FieldCvgWithScaleTest method) (credo.systest.fieldWithinTolTest.FieldWithinTolTest method) (credo.systest.imageCompTest.ImageCompTest method) (credo.systest.outputWithinRangeTest.OutputWithinRangeTest method) checkAllXMLInputFilesExist() (in module credo.io.stgpath) checkNoDuplicates() (credo.modelrun.SimParams method) checkParamOverridesTypes() (in module credo.modelrun) checkResultValid() (credo.systest.analytic.AnalyticTest method) (credo.systest.analyticMultiRes.AnalyticMultiResTest method) (credo.systest.api.SysTest method) (credo.systest.imageReference.ImageReferenceTest method) (credo.systest.reference.ReferenceTest method) (credo.systest.restart.RestartTest method) (credo.systest.scibenchmark.SciBenchmarkTest method) checkSolverOptsFile() (credo.modelrun.ModelRun method) checkStgXMLResultsEnabled() (credo.analysis.fields.FieldComparisonList method) checkType() (credo.modelrun.StgParamInfo method) checkValidParams() (credo.modelrun.SimParams method) checkXMLInputFileExists() (in module credo.io.stgpath) cleanAllLogFiles() (credo.modelsuite.ModelSuite method) cleanAllOutputPaths() (credo.modelsuite.ModelSuite method) cmdLineStr() (credo.modelsuite.StgXMLVariant method) colourDiff() (in module credo.analysis.images) compare() (in module credo.analysis.images) constructStGermainRunCommand() (credo.jobrunner.api.JobRunner method) convertLocalXMLFilesToAbsPaths() (in module credo.io.stgpath) cpFields (credo.modelrun.ModelRun attribute) cpReadPath (credo.modelrun.ModelRun attribute) createFlattenedXML() (in module credo.io.stgxml) createNewStgDataDoc() (in module credo.io.stgxml) credo.analysis (module) credo.analysis.api (module) credo.analysis.fields (module) credo.analysis.images (module) credo.analysis.stats (module) credo.io (module) credo.io.stgcmdline (module)

credo.io.stgcvg (module) credo.io.stgfreq (module) credo.io.stgpath (module) credo.io.stgxml (module) credo.jobrunner (module) credo.jobrunner.api (module) credo.jobrunner.mpijobrunner (module) credo.modelresult (module) credo.modelrun (module) credo.modelsuite (module) credo.systest (module) credo.systest.analytic (module) credo.systest.analyticMultiRes (module) credo.systest.api (module) credo.systest.fieldCvgWithScaleTest (module) credo.systest.fieldWithinTolTest (module) credo.systest.imageCompTest (module) credo.systest.imageReference (module) credo.systest.outputWithinRangeTest (module) credo.systest.reference (module) credo.systest.restart (module) credo.systest.scibenchmark (module) credo.systest.systestrunner (module) credo.utils (module) CREDO_ERROR (class in credo.systest.api) CREDO_FAIL (class in credo.systest.api) CREDO_PASS (class in credo.systest.api) CvgFileInfo (class in credo.io.stgcvg) cvgFileInfo (credo.analysis.fields.FieldComparisonResult attribute) CVGReadError

D

DEF_TEST_FIELDS (in module credo.systest.reference) defaultModelResultFilename() (in module credo.modelresult) defaultModelRunFilename() (credo.modelrun.ModelRun method) defaultSysTestFilename() (credo.systest.api.SysTest method) defFieldTol (credo.systest.fieldWithinTolTest.FieldWithinTolTest attribute)

defVal (credo.modelrun.StgParamInfo attribute) detailMsg (credo.systest.api.SysTestResult attribute) dofColMap (credo.io.stgcvg.CvgFileInfo attribute) dofErrors (credo.analysis.fields.FieldComparisonResult attribute)

F

fComps (credo.systest.fieldCvgWithScaleTest.FieldCvgWithScaleTest attribute) (credo.systest.fieldWithinTolTest.FieldWithinTolTest attribute) fCvgMeetsReq (credo.systest.fieldCvgWithScaleTest.FieldCvgWithScaleTest attribute) fCvgResults (credo.systest.fieldCvgWithScaleTest.FieldCvgWithScaleTest attribute) fErrorsByRun (credo.systest.fieldCvgWithScaleTest.FieldCvgWithScaleTest attribute) Field FieldComparisonList (class in credo.analysis.fields) FieldComparisonOp (class in credo.analysis.fields) FieldComparisonResult (class in credo.analysis.fields) fieldCvgCrits (credo.systest.fieldCvgWithScaleTest.FieldCvgWithScaleTest attribute) FieldCvgWithScaleTest (class in credo.systest.fieldCvgWithScaleTest) fieldErrors (credo.systest.fieldWithinTolTest.FieldWithinTolTest attribute) fieldName (credo.analysis.fields.FieldComparisonResult attribute)

fieldResults (credo.modelresult.ModelResult attribute) (credo.systest.fieldWithinTolTest.FieldWithinTolTest attribute) fields (credo.analysis.fields.FieldComparisonList attribute) fieldsToTest (credo.systest.fieldCvgWithScaleTest.FieldCvgWithScaleTest attribute) (credo.systest.fieldWithinTolTest.FieldWithinTolTest attribute) fieldTols (credo.systest.fieldWithinTolTest.FieldWithinTolTest attribute) FieldWithinTolTest (class in credo.systest.fieldWithinTolTest) filename (credo.io.stgcvg.CvgFileInfo attribute) finalStep() (credo.io.stgfreq.FreqOutput method) first() (in module credo.io.stgfreq) FreqOutput (class in credo.io.stgfreq) freqOutput (credo.modelresult.ModelResult attribute) fromXML (credo.analysis.fields.FieldComparisonList attribute) fTestName (credo.systest.analytic.AnalyticTest attribute) (credo.systest.reference.ReferenceTest attribute) (credo.systest.restart.RestartTest attribute)

G

genConvergenceFileIndex() (in module credo.io.stgcvg) generateResOpts() (in module credo.modelrun) generateRuns() (credo.modelsuite.ModelSuite method) genFlattenedXML() (credo.modelrun.ModelRun method) genPath (credo.systest.imageCompTest.ImageCompTest attribute) genSuite() (credo.systest.analytic.AnalyticTest method) (credo.systest.analyticMultiRes.AnalyticMultiResTest method) (credo.systest.api.SysTest method) (credo.systest.imageReference.ImageReferenceTest method) (credo.systest.reference.ReferenceTest method) (credo.systest.restart.RestartTest method) (credo.systest.scibenchmark.SciBenchmarkTest method) getAllRecords() (credo.io.stgfreq.FreqOutput method) getAllResults() (credo.analysis.fields.FieldComparisonList method) getCheckStepsRange() (in module credo.io.stgcvg) getCmpSrcString() (credo.analysis.fields.FieldComparisonList method) getColNum() (credo.io.stgfreq.FreqOutput method) getComparisonOp() (credo.io.stgfreq.FreqOutput method) getDefaultSubdir() (in module credo.modelsuite) getDefaultSubdirs() (in module credo.modelsuite) getDofErrors_ByDof() (in module credo.io.stgcvg) getDofErrors_ByStep() (in module credo.io.stgcvg) getDofErrorsByRun() (in module credo.systest.fieldCvgWithScaleTest) getDofErrorsForStep() (in module credo.io.stgcvg) getElementType() (in module credo.io.stgxml) getFieldScaleCvgData_SingleCvgFile() (in module credo.analysis.fields) getHeaders() (credo.io.stgfreq.FreqOutput method) getItemFromStrSpec_CurrentCtx() (in module credo.io.stgxml) getListNode() (in module credo.io.stgxml) getMax() (credo.io.stgfreq.FreqOutput method) getMean() (credo.io.stgfreq.FreqOutput method) getMin() (credo.io.stgfreq.FreqOutput method) getModelResultsArray() (in module credo.modelsuite) getNodeFromStrSpec() (in module credo.io.stgxml) getNumDofs() (in module credo.systest.fieldCvgWithScaleTest) getOutputSubPath() (credo.modelsuite.ModelSuite method) getParam() (credo.modelrun.SimParams method) getParamNode() (in module credo.io.stgxml) getParamOverridesAsStr() (in module credo.modelrun) getParamValue() (in module credo.io.stgxml) getParamValues() (in module credo.modelsuite)

getParamValuesIter() (in module credo.modelsuite) getRecordAtStep() (credo.io.stgfreq.FreqOutput method) getRecordDictAtStep() (credo.io.stgfreq.FreqOutput method) getRecordFile() (credo.systest.api.SysTestResult method) getRecordNum() (credo.io.stgfreq.FreqOutput method) getReductionOp() (credo.io.stgfreq.FreqOutput method) getRes() (in module credo.io.stgcvg) getResult() (credo.analysis.fields.FieldComparisonOp method) getResultsSubset() (credo.systest.api.SysTest method) getResultsTotals() (credo.systest.systestrunner.SysTestRunner method) getRunByName() (credo.modelsuite.ModelSuite method) getRunIndex() (credo.modelsuite.ModelSuite method) getSimInfoFromFreqOutput() (in module credo.modelresult) getStatus() (credo.systest.api.SysTest method) (credo.systest.scibenchmark.SciBenchmarkTest method) getStdErrFilename() (credo.modelrun.ModelRun method) getStdOutFilename() (credo.modelrun.ModelRun method) getStdTestName() (in module credo.systest.api) getStdTestNameBasic() (in module credo.systest.api) getStgBinPath() (in module credo.io.stgpath) getStGermainExeStr() (credo.jobrunner.api.JobRunner method) (credo.jobrunner.mpijobrunner.MPIJobRunner method) getStgStandardXMLPath() (in module credo.io.stgpath) getStructNode() (in module credo.io.stgxml) getSuiteResultsFilename() (credo.systest.systestrunner.SysTestRunner method) getSuitesFromModules() (in module credo.systest.systestrunner) getTimestepMap() (credo.io.stgfreq.FreqOutput method) getTimeStepsArray() (credo.io.stgfreq.FreqOutput method) getTolForField() (credo.systest.fieldWithinTolTest.FieldWithinTolTest method) getValueAtStep() (credo.io.stgfreq.FreqOutput method) getValuesArray() (credo.io.stgfreq.FreqOutput method) getVariantCmdLineOverrides() (in module credo.modelsuite) getVariantIndicesIter() (in module credo.modelsuite) getVariantNameDicts() (in module credo.modelsuite) getVariantParamPathDicts() (in module credo.modelsuite) getVerifyStgExePath() (in module credo.io.stgpath) getVerifyStgMainExecutablePath() (in module credo.io.stgpath)

H

headerColMap (credo.io.stgfreq.FreqOutput attribute)

I

ImageCompTest (class in credo.systest.imageCompTest) imageErrors (credo.systest.imageCompTest.ImageCompTest attribute) imageFilename (credo.systest.imageCompTest.ImageCompTest attribute) ImageReferenceTest (class in credo.systest.imageReference) imageResults (credo.systest.imageCompTest.ImageCompTest attribute)

indentForPrettyPrint() (in module credo.io.stgxml) Input File inputFiles (credo.systest.api.SysTest attribute) insertNamedElementNode() (in module credo.io.stgxml)

J

JobMetaInfo (class in credo.modelresult) jobMetaInfo (credo.modelresult.ModelResult attribute) JobParams (class in credo.modelrun)

jobParams (credo.modelrun.ModelRun attribute) JobRunner (class in credo.jobrunner.api)

L

last() (in module credo.io.stgfreq) linreg() (in module credo.analysis.stats)

logPath (credo.modelrun.ModelRun attribute)

M

maxRunTime (credo.jobrunner.api.ModelRunTimeoutError attribute) Mesh Model Model Result Model Run modelInputFiles (credo.modelrun.ModelRun attribute) modelName (credo.modelresult.ModelResult attribute) ModelResult (class in credo.modelresult) ModelRun (class in credo.modelrun)

ModelRunError ModelRunLaunchError ModelRunRegularError ModelRunTimeoutError ModelSuite (class in credo.modelsuite) modelVariants (credo.modelsuite.ModelSuite attribute) moveAllToTargetPath() (in module credo.io.stgpath) MPIJobRunner (class in credo.jobrunner.mpijobrunner) mSuite (credo.systest.api.SysTest attribute)

N

name (credo.analysis.fields.FieldComparisonOp attribute) (credo.modelrun.ModelRun attribute) navigateStrSpecHierarchy() (in module credo.io.stgxml) newSubSuite() (credo.systest.api.SysTestSuite method)

normalise() (in module credo.analysis.images) nproc (credo.modelrun.JobParams attribute) (credo.systest.api.SysTest attribute) (credo.systest.api.SysTestSuite attribute)

O

outputName (credo.systest.outputWithinRangeTest.OutputWithinRangeTest attribute) outputPath (credo.modelresult.ModelResult attribute) (credo.modelrun.ModelRun attribute)

outputPathBase (credo.modelsuite.ModelSuite attribute) (credo.systest.api.SysTest attribute) OutputWithinRangeTest (class in credo.systest.outputWithinRangeTest)

P

paramOverrides (credo.modelrun.ModelRun attribute) (credo.systest.api.SysTest attribute) paramPath (credo.modelsuite.StgXMLVariant attribute) paramRange (credo.modelsuite.StgXMLVariant attribute) paramStr() (in module credo.io.stgcmdline) pixelDiff() (in module credo.analysis.images) pixelDiff2x2() (in module credo.analysis.images) plotOverTime() (credo.analysis.fields.FieldComparisonResult method) (credo.io.stgfreq.FreqOutput method) plottedCvgFilename (credo.analysis.fields.FieldComparisonResult attribute) populated (credo.io.stgfreq.FreqOutput attribute) populateFromFile() (credo.io.stgfreq.FreqOutput method) postRun() (credo.analysis.api.AnalysisOperation method) (credo.analysis.fields.FieldComparisonList method) postRunCleanup() (credo.modelrun.ModelRun method)

prepareOutputLogDirs() (credo.modelrun.ModelRun method) printAllMinMax() (credo.io.stgfreq.FreqOutput method) printCvgResult() (in module credo.systest.fieldCvgWithScaleTest) printDetailMsg() (credo.systest.api.SysTestResult method) printResultsDetails() (credo.systest.systestrunner.SysTestRunner method) printResultsSummary() (credo.systest.systestrunner.SysTestRunner method) printSuiteResultsByProject() (credo.systest.systestrunner.SysTestRunner method) printSuiteResultsOrderFound() (credo.systest.systestrunner.SysTestRunner method) printSuiteTotalsShortSummary() (credo.systest.systestrunner.SysTestRunner method) productCalc() (in module credo.utils) projectName (credo.systest.api.SysTestSuite attribute) pType (credo.modelrun.StgParamInfo attribute)

R

readFrequentOutput() (credo.modelresult.ModelResult method) readFromStgXML() (credo.analysis.fields.FieldComparisonList method) (credo.modelrun.SimParams method) readResultsFromPath() (credo.modelsuite.ModelSuite method) recordFieldResult() (credo.modelresult.ModelResult method) reductionOp (credo.systest.outputWithinRangeTest.OutputWithinRangeTest attribute) referencePath (credo.analysis.fields.FieldComparisonList attribute) ReferenceTest (class in credo.systest.reference) refPath (credo.systest.imageCompTest.ImageCompTest attribute) removeNsPrefix() (in module credo.io.stgxml) resIndicesToTest (credo.systest.api.SysTest attribute) resSet (credo.systest.analyticMultiRes.AnalyticMultiResTest attribute) RestartTest (class in credo.systest.restart)

resultsList (credo.modelsuite.ModelSuite attribute) runCustomOptSets (credo.modelsuite.ModelSuite attribute) runDescrips (credo.modelsuite.ModelSuite attribute) runExecCmd (credo.jobrunner.api.ModelRunLaunchError attribute) runModel() (credo.jobrunner.api.JobRunner method) (credo.jobrunner.mpijobrunner.MPIJobRunner method) runs (credo.modelsuite.ModelSuite attribute) runSuite() (credo.jobrunner.api.JobRunner method) (credo.systest.systestrunner.SysTestRunner method) runSuites() (credo.systest.systestrunner.SysTestRunner method) runSuitesFromModules() (in module credo.systest.systestrunner) runTest() (credo.systest.systestrunner.SysTestRunner method) runTests() (credo.systest.systestrunner.SysTestRunner method)

S

SciBenchmarkTest (class in credo.systest.scibenchmark) setAllTimeouts() (credo.systest.api.SysTestSuite method) setErrorStatus() (credo.systest.api.SysTest method) setMergeType() (in module credo.io.stgxml) setParam() (credo.modelrun.SimParams method) setPath() (credo.modelrun.ModelRun method) setRecordFile() (credo.systest.api.SysTestResult method) setResIndicesToTest() (credo.systest.api.SysTest method) setTimeout() (credo.systest.api.SysTest method) setup() (credo.jobrunner.api.JobRunner method) (credo.jobrunner.mpijobrunner.MPIJobRunner method) (credo.systest.api.SysTest method) (credo.systest.imageReference.ImageReferenceTest method) (credo.systest.reference.ReferenceTest method) SimParams (class in credo.modelrun) simParams (credo.modelrun.ModelRun attribute) simtime (credo.modelresult.JobMetaInfo attribute) solverOpts (credo.modelrun.ModelRun attribute) (credo.systest.api.SysTest attribute) solverOptsStr() (in module credo.io.stgcmdline) statusStr (credo.systest.api.SysTestResult attribute) StGermain

stgName (credo.modelrun.StgParamInfo attribute) StgParamInfo (class in credo.modelrun) stgParamInfos (credo.modelrun.SimParams attribute) StgXMLVariant (class in credo.modelsuite) strRes() (in module credo.modelrun) strToBool() (in module credo.io.stgxml) subOutputPathGenFunc (credo.modelsuite.ModelSuite attribute) subSuites (credo.systest.api.SysTestSuite attribute) suiteName (credo.systest.api.SysTestSuite attribute) Swarm System Test SysTest (class in credo.systest.api) SysTestResult (class in credo.systest.api) SysTestRunner (class in credo.systest.systestrunner) sysTests (credo.systest.api.SysTestSuite attribute) SysTestSetupError SysTestSuite (class in credo.systest.api)

T

tcStatus (credo.systest.api.TestComponent attribute) tcType (credo.systest.api.TestComponent attribute) templateMRun (credo.modelsuite.ModelSuite attribute) testAllCvgWithScale() (in module credo.systest.fieldCvgWithScaleTest) TestComponent (class in credo.systest.api) testComponents (credo.systest.api.SysTest attribute) testCvgWithScale() (in module credo.systest.fieldCvgWithScaleTest)

testName (credo.systest.api.SysTest attribute) testStatus (credo.systest.api.SysTest attribute) testTimestep (credo.analysis.fields.FieldComparisonList attribute) testType (credo.systest.api.SysTest attribute) timeout (credo.systest.api.SysTest attribute) tol (credo.systest.imageCompTest.ImageCompTest attribute) tRange (credo.systest.outputWithinRangeTest.OutputWithinRangeTest attribute)

U

Underworld updateModelResultsXMLFieldInfo() (in module credo.modelresult) updateXMLWithResult() (credo.systest.api.SysTest method) (credo.systest.api.TestComponent method)

useHighResReference (credo.analysis.fields.FieldComparisonList attribute) useReference (credo.analysis.fields.FieldComparisonList attribute)

V

valLen() (credo.modelsuite.StgXMLVariant method) valStr() (credo.modelsuite.StgXMLVariant method)

Virtual method VRMS

W

withinRange (credo.systest.outputWithinRangeTest.OutputWithinRangeTest attribute) withinTol() (credo.analysis.fields.FieldComparisonResult method) writeAllModelResultXMLs() (credo.modelsuite.ModelSuite method) writeAllModelRunXMLs() (credo.modelsuite.ModelSuite method) writeInfoXML() (credo.analysis.api.AnalysisOperation method) (credo.analysis.fields.FieldComparisonList method) (credo.analysis.fields.FieldComparisonOp method) (credo.analysis.fields.FieldComparisonResult method) (credo.modelresult.JobMetaInfo method) (credo.modelrun.JobParams method) (credo.modelrun.ModelRun method) (credo.modelrun.SimParams method) writeInputsOutputsToCSV() (in module credo.modelsuite) writeMergeComponent() (in module credo.io.stgxml) writeParam() (in module credo.io.stgxml) writeParamList() (in module credo.io.stgxml)

writeParamOverridesInfoXML() (in module credo.modelrun) writeParamSet() (in module credo.io.stgxml) writePreRunXML() (credo.systest.api.SysTest method) (credo.systest.api.TestComponent method) writeRecordXML() (credo.modelresult.ModelResult method) writeSolverOptsInfoXML() (in module credo.modelrun) writeStgDataDocToFile() (in module credo.io.stgxml) writeStgDataXML() (credo.analysis.api.AnalysisOperation method) (credo.analysis.fields.FieldComparisonList method) (credo.modelrun.SimParams method) writeValueUsingStrSpec() (in module credo.io.stgxml) writeXMLDoc() (in module credo.io.stgxml)

X

xmlExistsInStdXMLPath() (in module credo.io.stgpath)